Commit ea4e2874 authored by Mark Hymers's avatar Mark Hymers Committed by Joe Lyons
Browse files

Add hdf5-tools dependency


Signed-off-by: Mark Hymers's avatarMark Hymers <mark.hymers@ynic.york.ac.uk>
parent f9fb3377
Pipeline #1355 passed with stage
in 14 minutes and 30 seconds
......@@ -2,7 +2,7 @@ default:
image: ynic/debian:yias
before_script:
- apt -qq update && apt -qq install -y python3-dateutil python3-h5py python3-numpy python3-dicom python3-nibabel python3-pytest python3-pytest-cov dcm2niix git
- apt -qq update && apt -qq install -y hdf5-tools python3-dateutil python3-h5py python3-numpy python3-dicom python3-nibabel python3-pytest python3-pytest-cov dcm2niix git
stages:
- build_test
......
......@@ -78,9 +78,9 @@ __all__.append('Destination')
class RawAndAnonDestination(Destination):
regex_patient = re.compile('^[EeRr]\d+$')
regex_study = re.compile('^[CcPp]\d+[Aa]?([-:]\w+)?$')
regex_anon = re.compile('^[CcPp]\d+[Aa]([-:]\w+)?$')
regex_patient = re.compile(r'^[EeRr]\d+$')
regex_study = re.compile(r'^[CcPp]\d+[Aa]?([-:]\w+)?$')
regex_anon = re.compile(r'^[CcPp]\d+[Aa]([-:]\w+)?$')
anon_extra_studies = ['STRUCTURAL', 'T1ONLY', 'T1LONG']
def __init__(self, basedir=None, anon_dir=None, raw_dir=None, **kwargs):
......
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