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- 26 Feb, 2021 1 commit
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Christopher Krapu authored
* Modifying cartesian product to allow for more >2D input arrays * Assert for equality in cartesian test * Mention #4482 in new features Co-authored-by:
Michael Osthege <michael.osthege@outlook.com>
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- 24 Feb, 2021 1 commit
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ricardoV94 authored
Closes #4485
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- 22 Feb, 2021 1 commit
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Pyrsos authored
* Create bash script for faster build * Use git-dir in bashscript to change branch * Better git command for checking out the pymc3-examples branch * First change the pymc3 examples branch * Address comments and suggestions on bash script * Rename bash file according to comments * Update fast_build_docs.sh Change `sh` -> `bash` in shell script Co-authored-by:
Marco Gorelli <marcogorelli@protonmail.com> Co-authored-by:
Marco Gorelli <marcogorelli@protonmail.com>
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- 12 Feb, 2021 3 commits
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Michael Osthege authored
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ricardoV94 authored
* Small fix Triangular logp and logcdf methods * Add tests for invalid parameters Uniform, Triangular, DiscreteUniform
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Martin Ingram authored
* Transform samples from sample_numpyro_nuts * Add `pymc3.sampling_jax._transform_samples` function which transforms draws * Modify `pymc3.sampling_jax.sample_numpyro_nuts` function to use this function to return transformed samples * Add release note * Update pymc3/sampling_jax.py Co-authored-by:
Junpeng Lao <junpenglao@gmail.com> * Added a small test * Split jax tests into their own workflow Co-authored-by:
Michael Osthege <michael.osthege@outlook.com> Co-authored-by:
Junpeng Lao <junpenglao@gmail.com>
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- 08 Feb, 2021 2 commits
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Thomas Wiecki authored
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⬆ ️ UPGRADE: Autoupdate pre-commit config *⬆ ️ UPGRADE: Autoupdate pre-commit config Co-authored-by:twiecki <twiecki@users.noreply.github.com>
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ricardoV94 authored
* Refactor and unseed TestMatchesScipy * Show arguments when check_logcdf fails * Reduce 64bit precision test_skew_normal * Mark xfail 32-bit for Gamma logcdf * Reduce 64bit precision test_inverse_gamma_alt_params
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- 06 Feb, 2021 1 commit
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Sayam Kumar authored
* Fix Dirichlet.logp by checking number of categories > 1 only at event dims * Update test_distributions.py * Removed the shape validation check to even work for last dimensional shape as 1. Modified the `test_dirichlet` function to check for the same. * Added a test to check Dirichlet.logp with different batch shapes. * Tested exact Dirichlet.logp values againt scipy implementation Given a mention in RELEASE-NOTES.md
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- 05 Feb, 2021 1 commit
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Chandan Kumar Roy authored
Make deepcopy of start dicts in pm.sample and `pm.find_MAP` to prevent inplace modification of user variables closes #4456
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- 04 Feb, 2021 2 commits
- 03 Feb, 2021 1 commit
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ricardoV94 authored
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- 02 Feb, 2021 1 commit
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Michael Osthege authored
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- 31 Jan, 2021 2 commits
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Ashish authored
* one class docs updated * Updated with docs with PEP 257 in one class * Updated with docs with PEP 257 in one class * updated * update * Update * update * Update pymc3/step_methods/metropolis.py Co-authored-by:
Thomas Wiecki <thomas.wiecki@gmail.com>
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Kaustubh authored
Avoid unclear TypeError when using theano.shared variables as input to distribution parameters (#4445) * Added default testvalue support for theano.shared Co-authored-by:
Ricardo <ricardo.vieira1994@gmail.com>
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- 29 Jan, 2021 1 commit
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ricardoV94 authored
* Add tests for edge cases * Add release-note
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- 28 Jan, 2021 2 commits
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Michael Osthege authored
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Michael Osthege authored
* Support imputations with ndarray data (closes #4437)
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- 22 Jan, 2021 2 commits
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ricardoV94 authored
* Evaluate only desired function in log1mexp_numpy * Do not change input inplace * Add release note
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Michael Osthege authored
* Mention removal of ArviZ-delegated plotting and stats * Mention most important breaking changes first
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- 21 Jan, 2021 4 commits
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Eelke Spaak authored
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Eelke Spaak authored
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Eelke Spaak authored
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Eelke Spaak authored
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- 20 Jan, 2021 1 commit
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ricardoV94 authored
* Test logcdf methods outside of finite edges * Fix failing logcdf methods * Disable failing tests temporarily * Revert removed xfail * Update docstring * Add more informative comment
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- 19 Jan, 2021 14 commits
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Osvaldo Martin authored
* refactor split variables, add prior split variables, add predict function * remove dirichlet * remove unused import * use to_numpy to convert a series/dataframe to an array. * use already defined variable
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Bas Nijholt authored
* make sure weights always sum up to 1, fix #4369 * always normalize self.weights in update_weights_beta * rephrase
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Michael Osthege authored
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Bas Nijholt authored
A test was added to asserts that strace.name is a string (this was not the case before #4365). Non-empty model names are actually not supported (again, see #4365) so attempting to SMC-sample a named model will now raise a NotImplementedError.
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Bas Nijholt authored
Currently, `name` is a `Model`.
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ricardoV94 authored
* Raise ValueError when there are no continuous variables Remove deprecated block of code * pre-commit * Remove unused imports
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Raul-ing Average authored
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🎉 Start removing Diagnostics & Plots in PyMC3 development🔥 Remove arviz plots * Remove directly imported arviz plots used in pymc3 plots🔥 Remove all plots from PyMC3 Plots module🔥 Remove PyMC3 plots references in Docs🎨 Mention Plotting & Diagnostics in API page and remove plots reference in __init__.py⏪ Revert posterior_plot function, test, and docs🎨 Add deprecation warning to posterior_plot function🎨 Add context on plot import and import back into __init__.py✏ Add warning and details of posterior_plot added Update docs/source/api/plots.rst Co-authored-by:Alexandre ANDORRA <andorra.alexandre@gmail.com> Update docs/source/api/plots.rst Co-authored-by:
Alexandre ANDORRA <andorra.alexandre@gmail.com> Update pymc3/plots/__init__.py Co-authored-by:
Alexandre ANDORRA <andorra.alexandre@gmail.com> Update pymc3/plots/__init__.py Co-authored-by:
Alexandre ANDORRA <andorra.alexandre@gmail.com>
✏ Update docs to add stats.rst details✏ Minor docs notation for posterioplot function(s)📝 Add breakline before docstring title *✏ small typo and remove summary in plots.rst -
Kaustubh authored
Closes #3938
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Michael Osthege authored
We do not have pytest-ordering in the dependencies and tests should be unordered anyway.
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Thomas Wiecki authored
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Eelke Spaak authored
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Eelke Spaak authored
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Michael Osthege authored
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Michael Osthege authored
Many gof imports were changed to explicit imports. This commit also changes the usage of change_flags because of pending deprecation.
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