This project is mirrored from https://github.com/pymc-devs/pymc3.git. Pull mirroring updated .
  1. 25 Jun, 2020 3 commits
  2. 24 Jun, 2020 5 commits
  3. 23 Jun, 2020 1 commit
  4. 20 Jun, 2020 1 commit
  5. 19 Jun, 2020 1 commit
  6. 17 Jun, 2020 1 commit
  7. 16 Jun, 2020 9 commits
  8. 13 Jun, 2020 5 commits
  9. 11 Jun, 2020 1 commit
  10. 10 Jun, 2020 2 commits
    • Bill Engels's avatar
      Fix reparameterized gp.TP `chi2` variable name (#3945) · 7a504305
      Bill Engels authored
      * reparameterized TP chi2 parameter has unique name now
      
      * also fix TP chi2 name in tests
      
      * remove path that somehow got to top of file...
      7a504305
    • Adrian Seyboldt's avatar
      Allow specification of dims instead of shape (#3551) · 76f3a7b7
      Adrian Seyboldt authored
      * Allow specification of dims instead of shape
      
      * Add pm.TidyData
      
      * Create coords for pm.Data(ndarray)
      
      * empty commit to trigger CI
      
      * Apply suggestions from code review
      Co-authored-by: default avatarAlexandre ANDORRA <andorra.alexandre@gmail.com>
      
      * apply black formatting
      
      * address review comments & formatting
      
      * Add demonstration of named coordinates/dims
      
      * don't require dim names to be identifiers
      
      * sort imports
      
      * raise ShapeError instead of ValueError
      
      * formatting
      
      * robustify Dtype and ShapeError
      
      * Removed TidyData and refined dims and coords implementation
      
      * Changed name of kwarg export_dims and improved docstrings
      
      * Add link to ArviZ in docstrings
      
      * Removed TidyData from __all__
      
      * Polished Data container NB
      
      * Fixed line break in data.py
      
      * Fix inference of coords for dataframes
      
      * Refined Data container NB
      
      * Updated getting started NB with new dims and coords features
      
      * Reran getting started NB
      
      * Blackified NBs
      
      * rerun with ArviZ branch
      
      * use np.shape to be compatible with tuples/lists
      
      * add tests for named coordinate handling
      
      * Extended tests for data container
      Co-authored-by: default avatarMichael Osthege <m.osthege@fz-juelich.de>
      Co-authored-by: default avatarMichael Osthege <michael.osthege@outlook.com>
      Co-authored-by: default avatarAlexandre ANDORRA <andorra.alexandre@gmail.com>
      76f3a7b7
  11. 09 Jun, 2020 4 commits
  12. 04 Jun, 2020 1 commit
  13. 29 May, 2020 1 commit
  14. 28 May, 2020 1 commit
    • Michael Osthege's avatar
      return_inferencedata option for pm.sample (#3911) · aafa00bc
      Michael Osthege authored
      * mention arviz functions by name in warning
      
      * convert to InferenceData already in sample function
      + convert to InferenceData and save metadata to it already in sample()
      + pass idata instead of trace to convergence check, to avoid duplicate work
      + directly use arviz diagnostics instead of pymc3 aliases
      
      * fix refactoring bugs
      
      * fix indentation
      
      * add return_inferencedata option
      + set to None
      + defaults to False
      
      * Fix numpy docstring format.
      
      Replaced "<varname>: <type>" with "<varname> : <type>" per numpy guidelines.
      
      Fix spelling typo.
      
      * pass model to from_pymc3 because of deprecation warning
      
      * add test for return_inferencedata option
      
      * advise against keeping warmup draws in a MultiTrace
      
      * mention #3911
      
      * pin to arviz 0.8.0 and address review feedback
      
      * rerun/update notebook to show inferencedata trace
      
      * fix typo
      
      * make all from_pymc3 accessible to the user
      
      * remove duplicate entry, and wording
      
      * address review feedback
      
      * update arviz to 0.8.1 because of bugfix
      
      * incorporate review feedback
      + more direct use of ArviZ
      + some wording things
      
      * use arviz plot_ppc
      
      * also ignore Visual Studio cache
      
      * fix warmup saving logic and test
      
      * require latest ArviZ patch
      
      * change warning to nuget users towards InferenceData
      
      * update ArviZ minimum version
      
      * address review feedback
      
      * start showing the FutureWarning about return_inferencedata in minor release >=3.10
      
      * require arviz>=0.8.3 for latest bugfix
      Co-authored-by: default avatarrpgoldman <rpgoldman@goldman-tribe.org>
      aafa00bc
  15. 25 May, 2020 1 commit
  16. 23 May, 2020 1 commit
  17. 20 May, 2020 1 commit
  18. 18 May, 2020 1 commit
    • Alexandre ANDORRA's avatar
      Expand pm.Data capacities (#3925) · 1ed04784
      Alexandre ANDORRA authored
      * Initial changes to allow pymc3.Data() to support both int and float input data (previously all input data was coerced to float)
      WIP for #3813
      
      * added exception for invalid dtype input to pandas_to_array
      
      * Refined implementation
      
      * Finished dtype conversion handling
      
      * Added SharedVariable option to getattr_value
      
      * Added dtype handling to set_data function
      
      * Added tests for pm.Data used for index variables
      
      * Added tests for using pm.data as RV input
      
      * Ran Black on data tests files
      
      * Added release note
      
      * Updated release notes
      
      * Updated code in light of Luciano's comments
      
      * Fixed implementation of integer checking
      
      * Simplified implementation of type checking
      
      * Corrected implementation for other uses of pandas_to_array
      Co-authored-by: default avatarhottwaj <jonathan.a.clarke@gmail.com>
      1ed04784