Move from nosetests to py.test

Signed-off-by: Mark Hymers <mark.hymers@ynic.york.ac.uk>

.gitlab-ci.yml

@@ -21,7 +21,7 @@ build_test:
     - ls
     - cd build
     - ls
-    - PYTHONPATH=../python-megdata/build/lib.linux-x86_64-2.7:lib.linux-x86_64-2.7 NAFTEST=../naf-testdata xvfb-run -a nosetests -c ../nose.cfg -v lib.linux-x86_64-2.7/naf
+    - PYTHONPATH=../python-megdata/build/lib.linux-x86_64-2.7:lib.linux-x86_64-2.7 NAFTEST=../naf-testdata xvfb-run -a py.test -c ../setup.cfg -v lib.linux-x86_64-2.7/naf
   artifacts:
     paths:
       - build

Makefile

@@ -50,22 +50,22 @@ clean:
 	rm -f $(PY5UICFILES)
 
 test: all
-	cd build && PYTHONPATH=lib.$(PYTHONARCH)/:$${PYTHONPATH} NAFTEST=../../naf-testdata nosetests -c ../nose.cfg lib.$(PYTHONARCH)/naf
+	cd build && PYTHONPATH=lib.$(PYTHONARCH)/:$${PYTHONPATH} NAFTEST=../../naf-testdata py.test -c ../setup.cfg lib.$(PYTHONARCH)/naf
 
 testv: all
-	cd build && PYTHONPATH=lib.$(PYTHONARCH)/:$${PYTHONPATH} NAFTEST=../../naf-testdata nosetests -c ../nose.cfg -v lib.$(PYTHONARCH)/naf
+	cd build && PYTHONPATH=lib.$(PYTHONARCH)/:$${PYTHONPATH} NAFTEST=../../naf-testdata py.test -c ../setup.cfg -v lib.$(PYTHONARCH)/naf
 
 testbin: all
-	cd build && NAFBIN=../bin PYTHONPATH=lib.$(PYTHONARCH)/:$${PYTHONPATH} NAFTEST=../../naf-testdata nosetests -c ../nose.cfg ../bin/test -s
+	cd build && NAFBIN=../bin PYTHONPATH=lib.$(PYTHONARCH)/:$${PYTHONPATH} NAFTEST=../../naf-testdata py.test -c ../setup.cfg ../bin/test -s
 
 testbinv: all
-	cd build && NAFBIN=../bin PYTHONPATH=lib.$(PYTHONARCH)/:$${PYTHONPATH} NAFTEST=../../naf-testdata nosetests -v -c ../nose.cfg ../bin/test -s
+	cd build && NAFBIN=../bin PYTHONPATH=lib.$(PYTHONARCH)/:$${PYTHONPATH} NAFTEST=../../naf-testdata py.test -v -c ../setup.cfg ../bin/test -s
 
 testall: all
-	cd build && NAFBIN=../bin PYTHONPATH=lib.$(PYTHONARCH)/:$${PYTHONPATH} NAFTEST=../../naf-testdata nosetests -c ../nose.cfg ../bin/test lib.$(PYTHONARCH)/naf -s
+	cd build && NAFBIN=../bin PYTHONPATH=lib.$(PYTHONARCH)/:$${PYTHONPATH} NAFTEST=../../naf-testdata py.test -c ../setup.cfg ../bin/test lib.$(PYTHONARCH)/naf -s
 
 testallv: all
-	cd build && NAFBIN=../bin PYTHONPATH=lib.$(PYTHONARCH)/:$${PYTHONPATH} NAFTEST=../../naf-testdata nosetests -v -c ../nose.cfg ../bin/test lib.$(PYTHONARCH)/naf -s
+	cd build && NAFBIN=../bin PYTHONPATH=lib.$(PYTHONARCH)/:$${PYTHONPATH} NAFTEST=../../naf-testdata py.test -v -c ../setup.cfg ../bin/test lib.$(PYTHONARCH)/naf -s
 
 install:
 	python setup.py install --prefix=$(DESTDIR)/usr

README

@@ -31,14 +31,12 @@ release onwards).  Package names are Debian binary package names.
     fftw-dev >= 2.1.5
     python-statsmodels >= 0.8
     python-sphinx >= 1.2.3 (for building documentation and reports)
-    python-nose >= 1.3.4 (for running the test suite)
     python-vtk >= 5.6
     python-bibtex >= 1.2.4
     libgsl0-dev >= 1.14
     fftw-dev >= 2.1.3
     python-sphinx >= 1.0.7
-    python-nose >= 0.11 (for running the test suite)
-    python-coverage (for getting test coverage)
+    python-pytest and python.pytest.cov (for running the test suite)
     xvfb (if building on a machine without an X display set)
 
 For use in MPI mode, you will also need:
@@ -64,8 +62,8 @@ apt-get install python-numpy python-scipy python-matplotlib python-h5py \
                 python-imaging python-dicom python-nifti python-sklearn \
                 python-wxgtk3.0 python-yaml python-mpi4py python-pyqt5 \
                 python-pyqt5.qtopengl pyqt5-dev-tools python-vtk python-bibtex \
-                python-sphinx libgsl0-dev fftw-dev python-nose python-coverage \
-                python-statsmodels
+                python-sphinx libgsl0-dev fftw-dev python-coverage \
+                python-statsmodels python-pytest python-pytest.cov
 
 You will also need build-essential and the relevant python development packages
 installed.  A safe way to ensure you have it all is:

debian/control

@@ -3,7 +3,7 @@ Section: science
 Priority: extra
 Maintainer: Mark Hymers <mark.hymers@ynic.york.ac.uk>
 Build-Depends: debhelper (>= 7), fftw-dev, openmpi-bin, libopenmpi-dev, libgsl0-dev, xvfb,
-               python-coverage, python-nose, python-sphinx, python-bibtex,
+               python-coverage, python-pytest, python-pytest.cov, python-sphinx, python-bibtex,
                python-h5py, python-numpy, python-scipy, python-matplotlib,
                python-nifti, python-yaml, python-mpi4py, python-sklearn, python-imaging,
                pyqt5-dev-tools, python-pyqt5, python-pyqt5.qtopengl, python-vtk6,

nose.cfg

-[nosetests]
-with-coverage=1
-cover-package=debian
-cover-inclusive=true
-cover-package=naf.abstract,naf.store,naf.extern,naf.maths,naf.meg,naf.register,naf.utils,naf.ynic
-cover-erase=true

setup.cfg

+[flake8]
+max-line-length=120
+exclude=*.md,*.yaml,setup.cfg,build/,docgen/
+extend-ignore=E741
+
+[build_sphinx]
+source-dir = doc
+build-dir = docgen
+
+[tool:pytest]
+addopts = --cov naf --cov-report=term-missing